MapNext Tool name | MapNext |
---|
URL | http://evolution.sysu.edu.cn/english/software/mapnext.htm |
---|
Important features | 1. Facilitate the conversion of text based output into a SQL database.
2. Provides useful information about the SNP detection from population sequences.
3. Used for RNA-Seq Alignment. |
---|
Citations | Bao H, Xiong Y, Guo H, Zhou R, Lu X, Yang Z, Zhong Y, Shi S. MapNext: a
software tool for spliced and unspliced alignments and SNP detection of short
sequence reads. BMC Genomics. 2009 Dec 3;10 Suppl 3:S13. PubMed PMID: 19958476;
PubMed Central PMCID: PMC2788365. |
---|
Year of publication | 2009 |
---|
Rank by usage frequency | 100 |
---|
Comments | |
---|
Function | RNA seq alignment, SNP discovery |
---|
Category | Free, Downloadable |
---|
License | |
---|
Status | |
---|
Input file format | Reference file in FASTA format, reads in FASTA or FASTQ format. |
---|
Output file format | MAP, Cluster file, Spliced map file, SNP file
|
---|
Operating system | Linux/Unix |
---|
Operating language | C++, Perl |
---|
Platform | Illumina/Solexa |
---|
Maintained by | |
---|
Downloadable file format | |
---|
Submission file format | |
---|
| |